Researchers using an extremely fast electron camera at the Department of Energy’s SLAC National Accelerator Laboratory have made the first high-definition “movie” of ring-shaped molecules breaking open in response to light. Such results could further scientific understanding of similar reactions with vital roles in chemistry, such as the production of vitamin D in our bodies.
A previous molecular movie of the same reaction, produced with SLAC’s Linac Coherent Light Source (LCLS) X-ray laser, for the first time recorded the large structural changes during the reaction. Now, making use of the lab’s ultrafast electron diffraction (UED) instrument, these new results provide high-resolution details—showing, for instance, how a bond in the ring breaks and atoms jiggle around for extended periods of time.
“The details of this ring-opening reaction have now been settled,” says Thomas Wolf, a scientist at the Stanford Pulse Institute of SLAC and Stanford University and leader of the research team. “The fact that we can now directly measure changes in bond distances during chemical reactions allows us to ask new questions about fundamental processes stimulated by light.”
SLAC scientist Mike Minitti, who was involved in both studies, says the results demonstrate how unique instruments for studying ultrafast processes complement one another. “Where LCLS excels in capturing snapshots with extremely fast shutter speeds of only a few femtoseconds, or millionths of a billionth of a second, UED cranks up the spatial resolution of these snapshots,” he says. “This is a great result and the studies validate one another’s findings, which is important when making use of entirely new measurement tools.”
SLAC’s UED instrument is now available to the broad scientific community, in addition to enhancing the extraordinary capabilities of LCLS by doubling its energy reach and transforming its repetition rate. “The combination of both tools uniquely positions us to enable the best possible studies of fundamental processes on ultrasmall and ultrafast scales,” says Mike Dunne, LCLS director.
This particular reaction has been studied many times before: when a ring-shaped molecule called 1,3-cyclohexadiene (CHD) absorbs light, a bond breaks and the molecule unfolds to form the almost linear molecule known as 1,3,5-hexatriene (HT). The process is a textbook example of ring-opening reactions and serves as a simplified model for studying light-driven processes during vitamin D synthesis.
In 2015, researchers studied the reaction with LCLS, resulting in the first detailed molecular movie of its kind, and revealed how the molecule changed from a ring to a cigar-like shape after it was struck by a laser flash. The snapshots, which initially had limited spatial resolution, were brought further into focus through computer simulations.
The new study used UED—a technique in which researchers send an electron beam with high energy, measured in millions of electronvolts (MeV), through a sample—to precisely measure distances between pairs of atoms. Taking snapshots of these distances at different intervals after an initial laser flash and tracking how they change allows scientists to create a stop-motion movie of the light-induced structural changes in the sample.
The new data has also revealed several surprising details about the reaction, showing that the movements of the atoms accelerated as the CHD ring broke, helping the molecules rid themselves of excess energy and accelerating their transition to the stretched-out HT form.
SLAC’s movie also captured how the two ends of the HT molecule jiggled around as the molecules became more and more linear. These rotational motions went on for at least a picosecond, or a trillionth of a second. “I would have never thought these motions would last that long,” Wolf says. “It demonstrates that the reaction doesn’t end with the ring opening itself and that there is much more long-lasting motion in light-induced processes than previously thought.”
The scientists also used their experimental data to validate a newly developed computational approach for including the motions of atomic nuclei in simulations of chemical processes.
“UED provided us with data that have the high spatial resolution needed to test these methods,” says Stanford chemistry professor and PULSE researcher Todd Martinez, whose group led the computational analysis. “This paper is the most direct test of our methods and our results are in excellent agreement with the experiment.”
In addition to advancing the predictive power of computer simulations, Wolf says the results will help deepen the understanding of life’s fundamental chemical reactions. “We’re very hopeful our method will pave the way for studies of more complex molecules that are even closer to the ones used in life processes.”